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Protein data

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ASC  http://bioinformatics.isa.cnr.it/ASC/
ASPD  http://wwwmgs.bionet.nsc.ru/mgs/gnw/aspd/
BacTregulators  http://www.bactregulators.org/
BIOZON  http://biozon.org
Blocks  http://blocks.fhcrc.org/
CDD  http://www.ncbi.nlm.nih.gov/structure/cdd/cdd.shtml
CluSTr  http://www.ebi.ac.uk/clustr
COMe  http://www.ebi.ac.uk/come
CopS  http://203.90.127.70/copsv2/index.html
CSA  http://www.ebi.ac.uk/thornton
CSDBase  http://www.chemie.uni
CuticleDB  http://bioinformatics.biol.uoa.gr/cuticleDB
Cybase  http://research.imb.uq.edu.au/cybase/html/index.php
DBSubLoc  http://www.bioinfo.tsinghua.edu.cn/dbsubloc.html
DCCP  http://sdbi.sdut.edu.cn/DCCP/en/index.php
DExH/D Family Database  http://www.helicase.net/dexhd/dbhome.htm
eBLOCKS  http://fold.stanford.edu/eblocks/acsearch.html
eMOTIF  http://motif.stanford.edu/emotif
Endogenous GPCR List  http://www.tumor
EROP Moscow
ESTHER  http://www.ensam.inra.fr/esther
FunShift  http://funshift.cgb.ki.se/
GPCRDB  http://www.gpcr.org/7tm/
gpDB  http://bioinformatics.biol.uoa.gr/gpDB
Histone Database  http://research.nhgri.nih.gov/histones/
Hits  http://hits.isb
Homeobox Page  http://www.biosci.ki.se/groups/tbu/homeo.html
Homeodomain Resource  http://research.nhgri.nih.gov/homeodomain/
HORDE  http://bioinfo.weizmann.ac.it/HORDE
Hox Pro
InBase  http://www.neb.com/neb/inteins.html
InterPro  http://www.ebi.ac.uk/interpro
iProClass  http://pir.georgetown.edu/gfserver/proclass.html
iProClass  http://pir.georgetown.edu/iproclass
KinG   Kinase in Genomes
Knottins  http://knnottin.cbs.cnrs.fr
LGICdb  http://www.pasture.fr/recherche/banques/LGIC/LGIC.html
Lipase Engineering Database  http://www.led.uni
LOCATE  http://mpdb.imb.uq.edu.au
LOX DB
MEROPS  http://merops.sanger.ac.uk/
Metalloprotein Site  http://metallo.scripps.edu/
MulPSSM  http://hodgkin.mbu.iisc.ernet.in/~mulpssm
NESbase  http://www.cbs.dtu.dk/database/NESbase
NLSdb  http://cubic.bioc.columbia.edu/db/NLSdb/
NMPdb  http://www.rostlab.org/db/NMPdb/
NOPdb  http://www.lamondlab.com/NOPdb/
NPD  http://npd.hgu.mrc.ac.uk/
Nuclear Receptor Resource  http://nrr.georgetown.edu/NRR/nrrhome.html
NuclearRDB  http://www.receptors.org/NR/
NUREBASE  http://www.ens
NURSA  http://www.nursa.org
O GlycBase
Olfactory Recptor Database  http://senselab.med.yale.edu/senselab/ordb/
ooTFD  http://www.ifti.org/ootfd
PA GOSUB
PDBSite  http://srs6.bionet.nsc.ru/srs6/
Pfam  http://www.sanger.ac.uk/Software/Pfam/
Phospho.ELM  http://phospho.elm.eu.org/
PINT  http://pintdb.dyndns.org/index.html
PIR ALN
PIR NREF
PIRSF  http://pir.gerogetown.edu/pirsf/
PKR  http://pkr.sdsc.edu/html/index.shtml
PLPMDB  http://www.studiofmp.com/plpmdb/
PPD  http://www.jenner.ac.uk/ppd
PRECISE  http://precise.bu.edu/precisedb/
PRF  http://www.prf.or.jp/en
PRINTS  http://umber.sbs.man.ac.uk/dbbrowser/PRINTS/
ProDom  http://www.toulouse.inra.fr/prodom.html
ProLysED  http://genome.ukm.my/prolyses
Prolysis  http://delphi.phys.univ
PROMISE  http://metallo.scripps.edu/PROMISE
ProNIT  http://gibk26.bse.kyutech.ac.jp/jouhou/pronit/pronit.html
ProRule http://expasy.org/tools/scanprosite
PROSITE  http://expasy.org/prosite
ProTeus http://www.proteus.cs.huji.ac.il/
ProTherm  http://gibk26.bse.kyutech.ac.jp/jouhou/protherm/protherm.html
ProtoMap  http://protomap.cornell.edu/
ProtoNet  http://www.protonet.cs.hugi.ac.il/
PSORTdb  http://db.psort.org/
REBASE  http://rebase.neb.com/rebase/rebase.html
REFOLD  http://www.refold.med.monash.edu.au
Ribonuclease P Database  http://www.mbio.ncsu.edu/RNaseP/home.html
RNRdb  http://rnrdb.molbio.su.se/
RPG  http://ribosome.miyazaki
RTKdb  http://pbil.univ
S/MARt db  http://smartdb.bioinf.med.uni
S4  http://compbio.mds.qmw.ac.uk/~james/S4.shtml
SBASE  http://www.icgeb.org/sbase
Scorpion  http://research.i2r.a
SDAP  http://fermi.utmb.edu/SDAP
SENTRA  http://compbio.mcs.anl.gov/sentra/
SEVENS  http://sevens.cbrc.jp/
SIMAP  http://mips.gsf.de/services/analysis/simap/
SitesBase  http://www.bioinformatics.leeds.ac.uk/sb/
SMART  http://smart.embi
SPD  http://spd.cbi.pku.edu.cn
SRPDB  http://bio.lundberg.gu.se/dbs/SRPDB/SRPDB.html
SUPFAM  http://pauling.mbu.iisc.ernet.in/~supfam
Swiss Prot
SYSTERS  http://systers.molgen.mpg.de/
TCDB  http://www.tcdb.org/
TECRdb  http://xpdb.nist.gov/enzyme_thermodynamics/
THGS  http://pranag.physics.iisc.ernet.in/thgs/
TIGRFAMs  http://www.tigr.org/TIGRFAMs
TMPDB  http://bioinfo.si.hirosaki
TrEMBL  http://www.expasy.org/sprot
TrSDB  http://bioinf.uab.es/cgi
UniParc  http://www.uniprot.org/database/archive.shtml
UniProt   http://www.uniprot.org/
UniRef  http://www.uniprot.org/database/nref.shtml
VKCDB  http://vkcdb.biology.ualberta.ca/
WntDatabase  http://www.stanford.edu/~musse/wntwindow.html
•EXProt  http://www.cmbi.kun.nl/EXPort/
•MIPS  http://mips.gsf.de/
•NCBI Protein Database  http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein